If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ), 'gf_id' => 'HOM05D000757', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000757' ), 'data_identifier' => 'HOM05D000757', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000757', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '774', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03470' => 'bna', 'A02p03480' => 'bna', 'A03p02700' => 'bna', 'A03p07680' => 'bna', 'A03p07690' => 'bna', 'A09p00920' => 'bna', 'A09p69010' => 'bna', 'A10p22740' => 'bna', 'A10p22750' => 'bna', 'A10p22760' => 'bna', 'Aa31LG11G13260' => 'aar', 'Aa31LG11G13300' => 'aar', 'Aa31LG5G1020' => 'aar', 'Aa31LG5G13160' => 'aar', 'Aa31sc52G220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.38' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.693' => 'aag', 'Actinidia07980' => 'ach', 'Actinidia17129' => 'ach', 'Actinidia20258' => 'ach', 'Actinidia22873' => 'ach', 'Actinidia27294' => 'ach', 'Actinidia37746' => 'ach', 'Ah.02g115440' => 'amhyb', 'Ah.07g203440' => 'amhyb', 'AL1G11250' => 'aly', 'AL3G12090' => 'aly', 'AL6G16460' => 'aly', 'AL6G27230' => 'aly', 'AL6G27240' => 'aly', 'AL6G27280' => 'aly', 'AL6G52480' => 'aly', 'Aqoxy1G00658' => 'aox', 'Aqoxy2G02385' => 'aox', 'Aqoxy2G02812' => 'aox', 'Aqoxy3G00682' => 'aox', 'Aqoxy4G00116' => 'aox', 'Aqoxy4G00117' => 'aox', 'Aqoxy5G04316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.135E3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2P5KB6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92CJFF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS3ULH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQAE3D' => 'arhy', 'AT1G01225' => 'ath', 'AT3G02700' => 'ath', 'AT4G00905' => 'ath', 'AT5G06370' => 'ath', 'AT5G16330' => 'ath', 'AT5G16360' => 'ath', 'ATR0693G319' => 'atr', 'ATR0757G153' => 'atr', 'ATR0772G174' => 'atr', 'Atru.chr2.383' => 'acertr', 'Atru.chr5.712' => 'acertr', 'Atru.chr7.1380' => 'acertr', 'Atru.chr8.1361' => 'acertr', 'AUR62002517' => 'cqu', 'AUR62004523' => 'cqu', 'AUR62022732' => 'cqu', 'AUR62023678' => 'cqu', 'AUR62030736' => 'cqu', 'AUR62036375' => 'cqu', 'BcaB01g02298' => 'bca', 'BcaB01g04987' => 'bca', 'BcaB01g04988' => 'bca', 'BcaB01g04989' => 'bca', 'BcaB01g04990' => 'bca', 'BcaB01g04991' => 'bca', 'BcaB01g05990' => 'bca', 'BcaB05g21672' => 'bca', 'BcaB08g36852' => 'bca', 'BcaC03g18485' => 'bca', 'BcaC03g18488' => 'bca', 'BcaC04g18878' => 'bca', 'BcaC04g18880' => 'bca', 'BcaC04g18882' => 'bca', 'BcaC04g18883' => 'bca', 'BcaC04g18884' => 'bca', 'BcaC04g18886' => 'bca', 'BcaC04g18887' => 'bca', 'BcaC04g18888' => 'bca', 'BcaC04g18889' => 'bca', 'BcaC04g18890' => 'bca', 'BcaC04g20229' => 'bca', 'BcaC04g24112' => 'bca', 'BcaC07g42432' => 'bca', 'BcaNung02230' => 'bca', 'BcaNung02233' => 'bca', 'BcaNung02235' => 'bca', 'BcaNung02236' => 'bca', 'BcaNung02237' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00210' => 'bna', 'BolC1t05883H' => 'bol', 'BolC2t06748H' => 'bol', 'BolC3t12858H' => 'bol', 'BolC3t13387H' => 'bol', 'BolC3t13388H' => 'bol', 'BolC3t13389H' => 'bol', 'BolC3t13390H' => 'bol', 'BolC8t52872H' => 'bol', 'BolC9t53034H' => 'bol', 'BolC9t58903H' => 'bol', 'BolC9t58905H' => 'bol', 'BolC9t58906H' => 'bol', 'BolC9t58907H' => 'bol', 'BraA01t04623Z' => 'bra', 'BraA03t09632Z' => 'bra', 'BraA03t10096Z' => 'bra', 'BraA03t10097Z' => 'bra', 'BraA09t35763Z' => 'bra', 'BraA09t42238Z' => 'bra', 'BraA10t44337Z' => 'bra', 'BraA10t44338Z' => 'bra', 'C02p08260' => 'bna', 'C02p08270' => 'bna', 'C03p03100' => 'bna', 'C03p08920' => 'bna', 'C03p08930' => 'bna', 'C08p53580' => 'bna', 'C09p01010' => 'bna', 'C09p46400' => 'bna', 'C09p46410' => 'bna', 'C09p46430' => 'bna', 'C09p60720' => 'bna', 'C09p60730' => 'bna', 'CAN.G206.3' => 'can', 'CAN.G289.13' => 'can', 'CAN.G289.6' => 'can', 'CAN.G289.8' => 'can', 'CAN.G360.6' => 'can', 'CAN.G390.13' => 'can', 'CAN.G574.16' => 'can', 'CAN.G809.76' => 'can', 'CANSAT21G0787' => 'cansat', 'CANSAT21G0874' => 'cansat', 'CANSAT21G1318' => 'cansat', 'CANSAT21G2161' => 'cansat', 'CANSAT21G2534' => 'cansat', 'CANSAT56G0105' => 'cansat', 'CANSAT64G2199' => 'cansat', 'CANSAT78G0246' => 'cansat', 'CANSAT78G1314' => 'cansat', 'CARHR001240' => 'chi', 'CARHR054530' => 'chi', 'CARHR062780' => 'chi', 'CARHR062790' => 'chi', 'CARHR076700' => 'chi', 'CARHR196900' => 'chi', 'CARHR196910' => 'chi', 'CARHR196920' => 'chi', 'CARHR196930' => 'chi', 'CARHR196940' => 'chi', 'CARHR196950' => 'chi', 'CARHR196960' => 'chi', 'CARHR196970' => 'chi', 'CARHR196980' => 'chi', 'CARHR207120' => 'chi', 'CARHR249420' => 'chi', 'CARHR289010' => 'chi', 'Carub.0001s0099' => 'cru', 'Carub.0002s0707' => 'cru', 'Carub.0003s0180' => 'cru', 'Carub.0006s0526' => 'cru', 'Carub.0006s1452' => 'cru', 'Carub.0006s1455' => 'cru', 'Carub.0006s3596' => 'cru', 'Carub.0008s1138' => 'cru', 'Ca_05745_v3' => 'car', 'Ca_09523_v3' => 'car', 'Ca_11699_v3' => 'car', 'CBR_g16898' => 'cbr', 'CBR_g18705' => 'cbr', 'CBR_g23352' => 'cbr', 'CBR_g276' => 'cbr', 'CBR_g3617' => 'cbr', 'CBR_g8458' => 'cbr', 'Cc02_g31740' => 'ccan', 'Cc02_g39650' => 'ccan', 'Cc06_g06560' => 'ccan', 'Cc07_g12460' => 'ccan', 'Cc08_g16600' => 'ccan', 'CDE01G0557' => 'cde', 'CDE02G1330' => 'cde', 'CDE07G1221' => 'cde', 'CDE09G0144' => 'cde', 'CDE09G0245' => 'cde', 'CDE09G0906' => 'cde', 'CDE12G0827' => 'cde', 'Cfa003774' => 'cfa', 'Cfa003775' => 'cfa', 'Cfa008009' => 'cfa', 'Cfa020029' => 'cfa', 'Ciclev10011935m.g' => 'ccl', 'Ciclev10012536m.g' => 'ccl', 'Ciclev10012617m.g' => 'ccl', 'Ciclev10013369m.g' => 'ccl', 'Ciclev10021778m.g' => 'ccl', 'Ciclev10030137m.g' => 'ccl', 'CiPaw.01G078600' => 'cil', 'CiPaw.03G009000' => 'cil', 'CiPaw.04G006400' => 'cil', 'CiPaw.04G006500' => 'cil', 'CiPaw.10G017500' => 'cil', 'ClCG01G008320' => 'cla', 'ClCG05G000670' => 'cla', 'ClCG10G018340' => 'cla', 'COL.COLO4_03738' => 'col', 'COL.COLO4_06241' => 'col', 'COL.COLO4_13437' => 'col', 'COL.COLO4_14905' => 'col', 'COL.COLO4_14906' => 'col', 'COL.COLO4_14907' => 'col', 'COL.COLO4_14912' => 'col', 'COL.COLO4_15382' => 'col', 'COL.COLO4_15383' => 'col', 'COL.COLO4_15386' => 'col', 'COL.COLO4_15387' => 'col', 'COL.COLO4_15388' => 'col', 'COL.COLO4_15389' => 'col', 'COL.COLO4_15390' => 'col', 'COL.COLO4_15391' => 'col', 'COL.COLO4_15398' => 'col', 'COL.COLO4_29573' => 'col', 'COL.COLO4_29574' => 'col', 'COL.COLO4_29611' => 'col', 'Cpa.g.sc104.31' => 'cpa', 'Cpa.g.sc108.19' => 'cpa', 'Cpa.g.sc96.63' => 'cpa', 'CsaV3_3G007880' => 'csa', 'CsaV3_3G037960' => 'csa', 'CsaV3_3G037980' => 'csa', 'CsaV3_5G020240' => 'csa', 'CSS0008023' => 'camsi', 'CSS0008938' => 'camsi', 'CSS0017028' => 'camsi', 'CSS0017936' => 'camsi', 'CSS0021589' => 'camsi', 'CSS0022660' => 'camsi', 'CSS0024534' => 'camsi', 'CSS0036706' => 'camsi', 'CSS0045577' => 'camsi', 'DCAR_011626' => 'dca', 'DCAR_013441' => 'dca', 'DCAR_016916' => 'dca', 'Dinv02417' => 'din', 'Dinv06544' => 'din', 'Dinv06545' => 'din', 'Dinv06549' => 'din', 'Dinv12195' => 'din', 'Dinv12338' => 'din', 'Dinv19104' => 'din', 'Dinv28279' => 'din', 'Dinv29458' => 'din', 'Dinv34228' => 'din', 'Duzib093G0534' => 'dzi', 'Duzib093G1339' => 'dzi', 'Duzib128G1107' => 'dzi', 'Duzib133G1395' => 'dzi', 'Duzib138G0346' => 'dzi', 'Duzib138G1742' => 'dzi', 'Duzib177G0043' => 'dzi', 'Duzib177G0140' => 'dzi', 'Duzib177G0142' => 'dzi', 'Duzib177G0345' => 'dzi', 'Duzib177G0719' => 'dzi', 'Duzib177G0870' => 'dzi', 'Duzib177G0904' => 'dzi', 'Duzib177G1017' => 'dzi', 'Duzib177G1158' => 'dzi', 'ECA236G0968' => 'eca', 'ECA236G1948' => 'eca', 'ECA236G2411' => 'eca', 'ECA238G2234' => 'eca', 'ECA238G3245' => 'eca', 'ECA240G0944' => 'eca', 'ECA240G1220' => 'eca', 'ECA240G1821' => 'eca', 'ECA240G2476' => 'eca', 'ECA240G3103' => 'eca', 'ECA240G3461' => 'eca', 'ECA240G3553' => 'eca', 'ECA240G4068' => 'eca', 'EL10Ac1g00231' => 'bvu', 'EL10Ac3g06201' => 'bvu', 'EL10Ac5g12971' => 'bvu', 'Eucgr.A02591' => 'egr', 'Eucgr.E00032' => 'egr', 'Eucgr.G00022' => 'egr', 'Eucgr.G00024' => 'egr', 'Eucgr.G00025' => 'egr', 'Eucgr.G00028' => 'egr', 'Eucgr.G00030' => 'egr', 'Eucgr.H04265' => 'egr', 'Eucgr.H04269' => 'egr', 'Eucgr.H04271' => 'egr', 'Eucgr.H04309' => 'egr', 'Eucgr.K02621' => 'egr', 'FAN01G2238' => 'fan', 'FAN02G0415' => 'fan', 'FAN03G0801' => 'fan', 'FAN05G3154' => 'fan', 'FAN05G4472' => 'fan', 'FAN05G5521' => 'fan', 'FAN09G4624' => 'fan', 'FAN14G0763' => 'fan', 'FAN19G0934' => 'fan', 'FAN19G1567' => 'fan', 'FAN20G1824' => 'fan', 'FAN23G1054' => 'fan', 'FAN24G3151' => 'fan', 'FAN26G0009' => 'fan', 'FAN26G0784' => 'fan', 'FAN27G2901' => 'fan', 'FAN28G0972' => 'fan', 'FAN28G0991' => 'fan', 'FvH4_1g27210' => 'fve', 'FvH4_1g27240' => 'fve', 'FvH4_2g00790' => 'fve', 'FvH4_6g20310' => 'fve', 'FvH4_7g17011' => 'fve', 'FvH4_7g33470' => 'fve', 'FvH4_7g33520' => 'fve', 'Glyma.02G196800' => 'gma', 'Glyma.03G258900' => 'gma', 'Glyma.10G081500' => 'gma', 'Glyma.11G203800' => 'gma', 'Glyma.11G203900' => 'gma', 'Glyma.14G208400' => 'gma', 'Glyma.18G047000' => 'gma', 'Glyma.18G047100' => 'gma', 'Glyma.18G047200' => 'gma', 'Glyma.19G257600' => 'gma', 'Gohir.A04G068000' => 'ghi', 'Gohir.A08G124400' => 'ghi', 'Gohir.A08G216400' => 'ghi', 'Gohir.A08G216433' => 'ghi', 'Gohir.A08G216466' => 'ghi', 'Gohir.A08G216500' => 'ghi', 'Gohir.A08G216700' => 'ghi', 'Gohir.A09G134100' => 'ghi', 'Gohir.A13G169075' => 'ghi', 'Gohir.A13G169100' => 'ghi', 'Gohir.D04G106600' => 'ghi', 'Gohir.D07G141100' => 'ghi', 'Gohir.D08G145500' => 'ghi', 'Gohir.D08G232900' => 'ghi', 'Gohir.D08G233400' => 'ghi', 'Gohir.D08G233500' => 'ghi', 'Gohir.D08G233600' => 'ghi', 'Gohir.D08G233650' => 'ghi', 'Gohir.D08G233700' => 'ghi', 'Gohir.D09G130600' => 'ghi', 'Gorai.001G153000' => 'gra', 'Gorai.004G150500' => 'gra', 'Gorai.004G247400' => 'gra', 'Gorai.004G247900' => 'gra', 'Gorai.004G248000' => 'gra', 'Gorai.004G248100' => 'gra', 'Gorai.004G248200' => 'gra', 'Gorai.006G149300' => 'gra', 'Gorai.009G410700' => 'gra', 'Gorai.013G186000' => 'gra', 'GSVIVG01005255001' => 'vvi', 'GSVIVG01011152001' => 'vvi', 'GSVIVG01027187001' => 'vvi', 'GSVIVG01033227001' => 'vvi', 'HanXRQChr03g0086251' => 'han', 'HanXRQChr03g0086261' => 'han', 'HanXRQChr03g0086271' => 'han', 'HanXRQChr03g0086291' => 'han', 'HanXRQChr03g0086311' => 'han', 'HanXRQChr03g0086321' => 'han', 'HanXRQChr03g0086331' => 'han', 'HanXRQChr03g0086341' => 'han', 'HanXRQChr03g0086351' => 'han', 'HanXRQChr03g0086371' => 'han', 'HanXRQChr03g0086411' => 'han', 'HanXRQChr03g0086441' => 'han', 'HanXRQChr04g0094861' => 'han', 'HanXRQChr04g0120421' => 'han', 'HanXRQChr06g0170761' => 'han', 'HanXRQChr09g0239981' => 'han', 'HanXRQChr11g0321371' => 'han', 'HanXRQChr12g0365591' => 'han', 'HanXRQChr14g0443611' => 'han', 'HanXRQChr15g0472381' => 'han', 'Haze_14050' => 'cav', 'Haze_14061' => 'cav', 'Haze_15686' => 'cav', 'Haze_20184' => 'cav', 'Hma1.2p1_0005F.1_g004190' => 'hma', 'Hma1.2p1_0005F.1_g004200' => 'hma', 'Hma1.2p1_0079F.1_g041830' => 'hma', 'Hma1.2p1_0085F.1_g044050' => 'hma', 'Hma1.2p1_0085F.1_g044060' => 'hma', 'Hma1.2p1_0085F.1_g044080' => 'hma', 'Hma1.2p1_0085F.1_g044090' => 'hma', 'Hma1.2p1_0085F.1_g044100' => 'hma', 'Hma1.2p1_0101F.1_g049100' => 'hma', 'Hma1.2p1_0133F.1_g061330' => 'hma', 'Hma1.2p1_0133F.1_g061340' => 'hma', 'Hma1.2p1_0158F.1_g069775' => 'hma', 'Hma1.2p1_0171F.1_g075770' => 'hma', 'Hma1.2p1_0305F.1_g119360' => 'hma', 'Hma1.2p1_0305F.1_g119390' => 'hma', 'Hma1.2p1_0305F.1_g119400' => 'hma', 'Hma1.2p1_0305F.1_g119560' => 'hma', 'Hma1.2p1_0398F.1_g143890' => 'hma', 'Hma1.2p1_0603F.1_g187740' => 'hma', 'Hma1.2p1_0634F.1_g192940' => 'hma', 'Hma1.2p1_0786F.1_g217710' => 'hma', 'Hma1.2p1_0786F.1_g217720' => 'hma', 'Hma1.2p1_0786F.1_g217730' => 'hma', 'Hma1.2p1_1164F.1_g262830' => 'hma', 'Hma1.2p1_1164F.1_g262850' => 'hma', 'Hma1.2p1_1164F.1_g262860' => 'hma', 'Hma1.2p1_1597F.1_g292820' => 'hma', 'Hma1.2p1_1597F.1_g292830' => 'hma', 'Hma1.2p1_1616F.1_g293730' => 'hma', 'Hma1.2p1_1616F.1_g293740' => 'hma', 'Hma1.2p1_1616F.1_g293745' => 'hma', 'Hma1.2p1_1825F.1_g304340' => 'hma', 'Hma1.2p1_1825F.1_g304350' => 'hma', 'Hma1.2p1_2128F.1_g314700' => 'hma', 'Hma1.2p1_2751F.1_g327860' => 'hma', 'Hma1.2p1_3059F.1_g332190' => 'hma', 'Hma1.2p1_3354F.1_g335520' => 'hma', 'HPP92_001098' => 'vpl', 'HPP92_018289' => 'vpl', 'HPP92_025501' => 'vpl', 'HPP92_025535' => 'vpl', 'Hund12291' => 'sun', 'Hund14954' => 'sun', 'Hund16728' => 'sun', 'Hund27176' => 'sun', 'Lalb_Chr04g0251571' => 'lal', 'Lalb_Chr04g0261451' => 'lal', 'Lalb_Chr06g0164331' => 'lal', 'Lalb_Chr20g0117201' => 'lal', 'Lj1C1052T0' => 'lonja', 'Lj1g0003099' => 'lja', 'Lj1g0024984' => 'lja', 'Lj2A158T82' => 'lonja', 'Lj2A508G86' => 'lonja', 'Lj5g0010470' => 'lja', 'Lj6g0019870' => 'lja', 'Lj7A496T106' => 'lonja', 'LjContig00141g0024282' => 'lja', 'Lsat_1_v5_gn_2_54320' => 'lsa', 'Lsat_1_v5_gn_2_54340' => 'lsa', 'Lsat_1_v5_gn_2_54380' => 'lsa', 'Lsat_1_v5_gn_2_72361' => 'lsa', 'Lsat_1_v5_gn_3_140401' => 'lsa', 'Lsat_1_v5_gn_7_3161' => 'lsa', 'Manes.01G243700' => 'mes', 'Manes.02G082700' => 'mes', 'Manes.05G020300' => 'mes', 'Manes.08G033600' => 'mes', 'Manes.08G136750' => 'mes', 'Manes.09G150501' => 'mes', 'Manes.09G150601' => 'mes', 'Manes.09G150701' => 'mes', 'Mapoly0021s0148' => 'mpo', 'Mapoly0037s0149' => 'mpo', 'Mapoly0046s0039' => 'mpo', 'Mapoly0203s0001' => 'mpo', 'Mapoly0203s0002' => 'mpo', 'Mapoly0803s0001' => 'mpo', 'MBI04_g06929_MAGBIO' => 'mbi', 'MBI05_g03434_MAGBIO' => 'mbi', 'MBI05_g30578_MAGBIO' => 'mbi', 'MBI05_g30579_MAGBIO' => 'mbi', 'MBI05_g32167_MAGBIO' => 'mbi', 'MBI05_g34820_MAGBIO' => 'mbi', 'MBI05_g45680_MAGBIO' => 'mbi', 'MBI05_g45681_MAGBIO' => 'mbi', 'MBI17_g28775_MAGBIO' => 'mbi', 'MBI18_g03885_MAGBIO' => 'mbi', 'MD01G1232800' => 'mdo', 'MD07G1153700' => 'mdo', 'MD07G1305200' => 'mdo', 'MD09G1282900' => 'mdo', 'MD14G1039000' => 'mdo', 'MD17G1272600' => 'mdo', 'Medtr1g057650' => 'mtr', 'Medtr3g063980' => 'mtr', 'Medtr3g063990' => 'mtr', 'Medtr3g064020' => 'mtr', 'Medtr5g076250' => 'mtr', 'Medtr7g117750' => 'mtr', 'Medtr8g063140' => 'mtr', 'MELO3C006006.2' => 'cme', 'MELO3C009539.2' => 'cme', 'MELO3C009540.2' => 'cme', 'MELO3C025072.2' => 'cme', 'Migut.B01897' => 'egut', 'Migut.E00638' => 'egut', 'Migut.F01459' => 'egut', 'Migut.G01130' => 'egut', 'Migut.J00702' => 'egut', 'Migut.J00703' => 'egut', 'Migut.J00710' => 'egut', 'Migut.J00711' => 'egut', 'Migut.K01155' => 'egut', 'Migut.N01529' => 'egut', 'MSTRG.13723' => 'ama', 'MSTRG.17360' => 'ama', 'MSTRG.19309' => 'ama', 'MSTRG.28273' => 'ama', 'MSTRG.3657' => 'ama', 'Nitab4.5_0000258g0250' => 'nta', 'Nitab4.5_0000304g0080' => 'nta', 'Nitab4.5_0000304g0110' => 'nta', 'Nitab4.5_0000304g0120' => 'nta', 'Nitab4.5_0000304g0140' => 'nta', 'Nitab4.5_0000307g0030' => 'nta', 'Nitab4.5_0000357g0370' => 'nta', 'Nitab4.5_0000357g0390' => 'nta', 'Nitab4.5_0002686g0050' => 'nta', 'Nitab4.5_0002844g0050' => 'nta', 'Nitab4.5_0003266g0010' => 'nta', 'Nitab4.5_0003865g0080' => 'nta', 'Nitab4.5_0006392g0010' => 'nta', 'Nitab4.5_0006770g0020' => 'nta', 'Nitab4.5_0006976g0030' => 'nta', 'Nitab4.5_0010093g0010' => 'nta', 'Nitab4.5_0013657g0010' => 'nta', 'Nn1g00346' => 'nnu', 'Nn2g14306' => 'nnu', 'Nn2g15772' => 'nnu', 'Nn2g15774' => 'nnu', 'Nn2g15776' => 'nnu', 'Nn3g16138' => 'nnu', 'Nn3g19211' => 'nnu', 'Nn6g34688' => 'nnu', 'Nn8g40345' => 'nnu', 'Oeu024773.1' => 'oeu', 'Oeu034010.1' => 'oeu', 'Oeu044260.1' => 'oeu', 'Oeu050411.2' => 'oeu', 'Os05g0310600' => 'osa', 'Os05g0440100' => 'osa', 'Os08g0546900' => 'osa', 'Os09g0526800' => 'osa', 'Peaxi162Scf00117g00416' => 'pax', 'Peaxi162Scf00117g00417' => 'pax', 'Peaxi162Scf00344g01511' => 'pax', 'Peaxi162Scf00345g00025' => 'pax', 'Peaxi162Scf00586g00514' => 'pax', 'Peaxi162Scf00716g00433' => 'pax', 'PGR004G0164' => 'pgr', 'PGR004G0728' => 'pgr', 'PGR004G1908' => 'pgr', 'PGR004G2581' => 'pgr', 'PGR102G2679' => 'pgr', 'PGR142G0240' => 'pgr', 'PGR142G1589' => 'pgr', 'PGR142G3946' => 'pgr', 'PGR142G4373' => 'pgr', 'PGSC0003DMG400000237' => 'stu', 'PGSC0003DMG400005020' => 'stu', 'PGSC0003DMG400017742' => 'stu', 'PGSC0003DMG400021354' => 'stu', 'Phvul.006G115000' => 'pvu', 'Phvul.007G268000' => 'pvu', 'Phvul.008G242500' => 'pvu', 'Potri.002G174700' => 'ptr', 'Potri.004G078700' => 'ptr', 'Potri.005G056300' => 'ptr', 'Potri.006G203300' => 'ptr', 'Potri.013G043100' => 'ptr', 'Potri.014G101300' => 'ptr', 'Potri.017G142300' => 'ptr', 'Pp3c3_23360' => 'ppa', 'Prupe.2G192600' => 'ppe', 'Prupe.3G011400' => 'ppe', 'Prupe.6G174600' => 'ppe', 'Prupe.6G175500' => 'ppe', 'Prupe.6G175600' => 'ppe', 'Prupe.7G094600' => 'ppe', 'Psat2g050040' => 'psa', 'Psat3g001640' => 'psa', 'Psat5g144080' => 'psa', 'Psat5g144120' => 'psa', 'Psat5g144400' => 'psa', 'Psat6g114720' => 'psa', 'PSO063G0061' => 'pso', 'PSO135G0098' => 'pso', 'PSO210G3749' => 'pso', 'PSO339G0037' => 'pso', 'PSO384G3249' => 'pso', 'PSO384G4250' => 'pso', 'PSO761G0161' => 'pso', 'PSO782G3543' => 'pso', 'QL02p055057' => 'qlo', 'QL02p055102' => 'qlo', 'QL02p055109' => 'qlo', 'QL02p055193' => 'qlo', 'QL02p055228' => 'qlo', 'QL02p055264' => 'qlo', 'QL02p055306' => 'qlo', 'QL02p055755' => 'qlo', 'QL02p056377' => 'qlo', 'QL07p003675' => 'qlo', 'QL07p036715' => 'qlo', 'QL07p036742' => 'qlo', 'QL08p046026' => 'qlo', 'RcHm_v2.0_Chr1g0360421' => 'rch', 'RcHm_v2.0_Chr1g0383441' => 'rch', 'RcHm_v2.0_Chr1g0383561' => 'rch', 'RcHm_v2.0_Chr1g0383641' => 'rch', 'RcHm_v2.0_Chr1g0383731' => 'rch', 'RcHm_v2.0_Chr3g0475931' => 'rch', 'RcHm_v2.0_Chr3g0487631' => 'rch', 'RcHm_v2.0_Chr3g0487641' => 'rch', 'RcHm_v2.0_Chr3g0487651' => 'rch', 'RcHm_v2.0_Chr6g0251191' => 'rch', 'Rhsim07G0002400' => 'rsi', 'Rhsim07G0078600' => 'rsi', 'Rhsim07G0078700' => 'rsi', 'Rhsim07G0079300' => 'rsi', 'Rhsim10G0188600' => 'rsi', 'RhsimUnG0064900' => 'rsi', 'RhsimUnG0065100' => 'rsi', 'RhsimUnG0214600' => 'rsi', 'Sabra04G0052100' => 'sbr', 'Sabra04G0052200' => 'sbr', 'Sabra06G0156500' => 'sbr', 'Sabra14G0074500' => 'sbr', 'Sabra17G0119200' => 'sbr', 'SalBow3G4217' => 'sbo', 'SalBow4G0443' => 'sbo', 'SalBow5G0060' => 'sbo', 'SalBow5G2158' => 'sbo', 'SalBow5G3521' => 'sbo', 'SalBow6G0051' => 'sbo', 'SalBow6G0196' => 'sbo', 'SalBow6G0312' => 'sbo', 'SalBow6G1099' => 'sbo', 'SalBow6G1138' => 'sbo', 'SalBow6G1165' => 'sbo', 'SalBow6G1393' => 'sbo', 'SalBow6G1651' => 'sbo', 'SalBow6G1983' => 'sbo', 'SalBow6G2767' => 'sbo', 'SalBow6G3019' => 'sbo', 'SalBow6G3978' => 'sbo', 'SalBow6G4227' => 'sbo', 'SalBow6G4268' => 'sbo', 'SalBow6G5300' => 'sbo', 'SalBow6G6153' => 'sbo', 'SalBow6G6611' => 'sbo', 'SalBow6G7042' => 'sbo', 'SalBow6G7096' => 'sbo', 'SalBow6G7159' => 'sbo', 'Sc01g0002430' => 'sci', 'Sc07g0006410' => 'sci', 'Sc25g0002330' => 'sci', 'Sc25g0002360' => 'sci', 'Sed0002721' => 'sed', 'Sed0003672' => 'sed', 'Sed0015051' => 'sed', 'Sed0018992' => 'sed', 'Sed0019259' => 'sed', 'SEGI_03488' => 'sgi', 'SEGI_09073' => 'sgi', 'SEGI_12743' => 'sgi', 'SEGI_16058' => 'sgi', 'SEGI_22231' => 'sgi', 'SEGI_26332' => 'sgi', 'SEGI_29434' => 'sgi', 'SEGI_35241' => 'sgi', 'SEGI_40469' => 'sgi', 'SGA_v2.0_scaffold130G34340' => 'sas', 'SGA_v2.0_scaffold13G06635' => 'sas', 'SGA_v2.0_scaffold1G00229' => 'sas', 'SGA_v2.0_scaffold229G43283' => 'sas', 'SGA_v2.0_scaffold31G12852' => 'sas', 'SGA_v2.0_scaffold5G03043' => 'sas', 'SHI13063' => 'shi', 'SMO119G0361' => 'smo', 'Solyc01g007110.3' => 'sly', 'Solyc01g096150.4' => 'sly', 'Solyc02g081580.3' => 'sly', 'Solyc05g050520.4' => 'sly', 'Solyc12g055850.2' => 'sly', 'Sopen01g003090' => 'spe', 'Sopen01g039880' => 'spe', 'Sopen02g026200' => 'spe', 'Sopen05g028930' => 'spe', 'Sopen12g024340' => 'spe', 'Sp1g01060' => 'spa', 'Sp3g01730' => 'spa', 'Sp6g01210' => 'spa', 'Sp6g27810' => 'spa', 'Sp6g27820' => 'spa', 'Sp6g27830' => 'spa', 'Sp6g36480' => 'spa', 'TAR362G0590' => 'tar', 'TAR623G0640' => 'tar', 'TAR623G0993' => 'tar', 'TAR623G1250' => 'tar', 'TAR629G1036' => 'tar', 'TAR633G1120' => 'tar', 'THA.LOC104801360' => 'tha', 'THA.LOC104809951' => 'tha', 'THA.LOC104810164' => 'tha', 'THA.LOC104816622' => 'tha', 'THA.LOC104820928' => 'tha', 'Thecc.01G338800' => 'tca', 'Thecc.04G056300' => 'tca', 'Thecc.05G101200' => 'tca', 'Thecc.05G104400' => 'tca', 'Thecc.05G278500' => 'tca', 'Thecc.05G278600' => 'tca', 'Thecc.05G278800' => 'tca', 'Thecc.05G279000' => 'tca', 'Thecc.05G279100' => 'tca', 'Thecc.05G279400' => 'tca', 'Thecc.05G279500' => 'tca', 'Thecc.05G279600' => 'tca', 'Thecc.05G279900' => 'tca', 'Thecc.05G280000' => 'tca', 'Thecc.10G165600' => 'tca', 'Thhalv10008506m.g' => 'esa', 'Thhalv10014271m.g' => 'esa', 'Thhalv10014443m.g' => 'esa', 'Thhalv10014595m.g' => 'esa', 'Thhalv10021380m.g' => 'esa', 'Thhalv10027205m.g' => 'esa', 'Thhalv10028905m.g' => 'esa', 'TPR.G15392' => 'tpr', 'TPR.G15894' => 'tpr', 'TPR.G23228' => 'tpr', 'TPR.G2817' => 'tpr', 'TPR.G37306' => 'tpr', 'TPR.G37311' => 'tpr', 'TPR.G37354' => 'tpr', 'TPR.G37427' => 'tpr', 'TPR.G37428' => 'tpr', 'TPR.G4689' => 'tpr', 'TWI14G1115' => 'twi', 'TWI53G0074' => 'twi', 'TWI53G0483' => 'twi', 'TWI53G1445' => 'twi', 'TWI59G1285' => 'twi', 'TWI74G0715' => 'twi', 'TWI74G1152' => 'twi', 'TWI77G0415' => 'twi', 'unitig_0.g1676' => 'ugi', 'unitig_43.g31044' => 'ugi', 'unitig_45.g31545' => 'ugi', 'unitig_578.g16503' => 'ugi', 'unitig_744.g24519' => 'ugi', 'unitig_748.g7013' => 'ugi', 'vmacro04288' => 'vma', 'vmacro05106' => 'vma', 'vmacro09581' => 'vma', 'vmacro13858' => 'vma', 'vmacro13862' => 'vma', 'vmacro20422' => 'vma', 'VMungo0540G0774' => 'vmu', 'VMungo0540G1030' => 'vmu', 'VMungo0647G0847' => 'vmu', 'VMungo0720G3129' => 'vmu', 'Zm00001eb037610' => 'zma', 'Zm00001eb103200' => 'zma', 'Zm00001eb198640' => 'zma', 'Zm00001eb319240' => 'zma', 'Zm00001eb322570' => 'zma', 'Zm00001eb348400' => 'zma', 'Zm00001eb389180' => 'zma' ) $gf_id = 'HOM05D000757' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000757' ) $data_identifier = 'HOM05D000757' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 8, 'can' => (int) 8, 'cansat' => (int) 9, 'chi' => (int) 17, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 19, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 10, 'dzi' => (int) 15, 'eca' => (int) 13, 'bvu' => (int) 3, 'egr' => (int) 12, 'fan' => (int) 18, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 20, 'cav' => (int) 4, 'hma' => (int) 37, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 6, 'mbi' => (int) 10, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 13, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 25, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1